Biotechnology and Biomedical Engineering

Bioinformatics and Data Science in Biotechnology Lab
  1. Writing and reading sequence data in R
  2. Guanine-Cytosine content analysis and basics of DNA sequence statistics
  3. Pairwise sequence alignment of Protein or DNA sequences
  4. DNA sequence analysis and determining DNA open reading frames
  5. Reading Fasta using SequinR
  6. Querying NCBI database in R
  7. UniProt Protein Sequence Retrieval in R
  8. Gene finding: Finding Start and Stop codons using R
  9. Retrieving a list of sequences from UniProt
  10. Computing scoring matrices for amino acids and long pairwise alignment in R
  11. Calculating genetic distances between protein sequences
  12. Differential expression analyses of RNA-seq